Publications

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. PEA: an Integrated R Toolkit for Plant Epitranscriptome Analysis. Bioinfomatics, 2018.

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. A Deep Convolutional Neural Network Approach for Predicting Phenotypes from Genotypes. Planta, 2018.

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. Steroids-specific Target Library for Steroids Target Prediction. Steroids, 2018.

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. Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm. The Plant Cell, 2018.

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. Transcriptome-Wide Annotation of m5C RNA Modifications Using Machine Learning. Frontiers in Plant Science, 2018.

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. Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture. Genetics, 2018.

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. Evolution of Intron-poor Clades and Expression Patterns of the Glycosyltransferase Family 47. Planta, 2018.

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. Evolutionary Origin, Gradual Accumulation and Functional Divergence of Heat Shock Factor Gene Family with Plant Evolution. Frontiers in Plant Science, 2018.

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. Massive Expansion and Differential Evolution of Small Heat Shock Proteins with Wheat (Triticum aestivum L.) Polyploidization. Scientific Reports, 2017.

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. An Effective Strategy for Trait Combinations in Multiple-Trait Genomic Selection. ICIC 2017: Intelligent Computing Theories and Application, 2017.

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. A Systems Approach to a Spatio-temporal Understanding of the Drought Stress Response in Maize.. Scientific Reports, 2017.

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. Transcriptome Dynamics during Maize Endosperm Development. PLoS ONE, 2016.

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. Application of Machine Learning-Based Classification to Genomic Selection and Performance Improvement. ICIC 2016: Intelligent Computing Theories and Application, 2016.

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. A Meta-Analysis Based Method for Prioritizing Candidate Genes Involved in a Pre-specific Function. Frontiers in Plant Science, 2016.

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. RNA Sequencing of Laser-Capture Microdissected Compartments of the Maize Kernel Identifies Regulatory Modules Associated with Endosperm Cell Differentiation. The Plant Cell, 2015.

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. Machine Learning for Big Data Analytics in Plants.. Trends in Plant Science, 2014.

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. Dynamic Expression of Imprinted Genes Associates with Maternally Controlled Nutrient Allocation during Maize Endosperm Development. The Plant Cell, 2013.

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. KGBassembler: A Karyotype-based Genome Assembler for Brassicaceae Species. Bioinformatics, 2012.

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